recipe dram

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Homepage:

https://github.com/shafferm/DRAM/

Documentation:

https://github.com/shafferm/DRAM/wiki

License:

GPL / GPL-3.0

Recipe:

/dram/meta.yaml

Links:

doi: 10.1101/2020.06.29.177501

package dram

Versions:

1.4.0-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3-0,  1.2.4-1,  1.2.4-0,  1.2.2-0, 

1.4.0-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3-0,  1.2.4-1,  1.2.4-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.6-0

Depends:

• altair >=4

• barrnap

• curl

• hmmer

• mmseqs2 >10.6d92c

• networkx

• numpy

• openpyxl

• pandas >=1

• parallel

• prodigal

• python >=3.6

• ruby

• scikit-bio

• scipy <=1.8.1

• sqlalchemy

• trnascan-se >=2

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install dram

and update with:

conda update dram

or use the docker container:

docker pull quay.io/biocontainers/dram:<tag>

(see dram/tags for valid values for <tag>)

Notes

Databases are required. Please run 'DRAM-setup.py prepare_databases' with the respective options.

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