- recipe drax
A pipeline for Detecting Resistome Associated taXa.
- package drax¶
- depends bbmap:
- depends fastp:
- depends fastqc:
- depends groot:
- depends kaiju:
- depends krona:
- depends metacherchant:
- depends multiqc:
- depends nextflow:
- depends r-essentials:
- depends samtools:
- depends seqkit:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install drax and update with:: mamba update drax
To create a new environment, run:
mamba create --name myenvname drax
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/drax:<tag> (see `drax/tags`_ for valid values for ``<tag>``)