recipe dsrc

high-performance compression of sequencing reads stored in FASTQ format

Homepage:

https://github.com/refresh-bio/DSRC

License:

GNU GPL 2

Recipe:

/dsrc/meta.yaml

Links:

biotools: dsrc

package dsrc

(downloads) docker_dsrc

versions:
2015.06.04-9,  2015.06.04-8,  2015.06.04-7,  2015.06.04-6,  2015.06.04-5,  2015.06.04-4,  2015.06.04-3,  2015.06.04-2,  2015.06.04-1, 

2015.06.04-9,  2015.06.04-8,  2015.06.04-7,  2015.06.04-6,  2015.06.04-5,  2015.06.04-4,  2015.06.04-3,  2015.06.04-2,  2015.06.04-1,  2015.06.04-0,  2014.12.17-2,  2014.12.17-1

depends boost-cpp:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dsrc

and update with::

   mamba update dsrc

To create a new environment, run:

mamba create --name myenvname dsrc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dsrc:<tag>

(see `dsrc/tags`_ for valid values for ``<tag>``)

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Link to this page

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