recipe duphist

DupHIST: A toolkit for duplication history inference via substitution-based timeframe

Homepage:

https://github.com/minjeongjj/DupHIST

License:

MIT

Recipe:

/duphist/meta.yaml

package duphist

versions:

1.0.0-0

depends perl:

depends perl-config-tiny:

depends perl-data-dumper:

depends prank:

depends r-base:

depends r-cluster:

depends r-desctools:

depends r-doparallel:

depends r-foreach:

depends r-nbclust:

depends r-tictoc:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install duphist

and update with::

   mamba update duphist

To create a new environment, run:

mamba create --name myenvname duphist

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/duphist:<tag>

(see `duphist/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/duphist/README.html)