recipe dupre

Duplicate rate estimation using linear programming and the hypergeometric distribution

Homepage

https://bitbucket.org/genomeinformatics/dupre/

License

MIT

Recipe

/dupre/meta.yaml

package dupre

(downloads) docker_dupre

Versions

0.1-1, 0.1-0

Depends h5py

Depends numpy

Depends pulp

Depends pysam

Depends python

>=3.5,<3.6.0a0

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dupre

and update with:

conda update dupre

or use the docker container:

docker pull quay.io/biocontainers/dupre:<tag>

(see dupre/tags for valid values for <tag>)