recipe eagle

Eagle is a webtool for genome variants and snp analysis

Homepage:

https://bitbucket.org/christopherschroeder/eagle

License:

MIT / MIT License

Recipe:

/eagle/meta.yaml

package eagle

(downloads) docker_eagle

versions:

0.9.4.6-00.9.3.3-30.9.3.3-20.9.3.3-00.9.0-0

depends cyvcf2:

depends flask:

depends h5py:

depends numpy:

depends pybedtools:

depends pysam:

depends python:

>=3

depends scipy:

depends sqt:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install eagle

and update with::

   mamba update eagle

To create a new environment, run:

mamba create --name myenvname eagle

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/eagle:<tag>

(see `eagle/tags`_ for valid values for ``<tag>``)

Download stats