recipe edd

Enriched domain detector for ChIP-seq data

Homepage:

http://github.com/CollasLab/edd

License:

MIT / MIT

Recipe:

/edd/meta.yaml

package edd

versions:

1.1.19-4,  1.1.19-3,  1.1.19-2,  1.1.19-1,  1.1.19-0,  1.1.18-1,  1.1.18-0

depends libgcc-ng:

>=10.3.0

depends logbook:

depends numpy:

depends pandas:

depends patsy:

depends pybedtools:

depends pysam:

0.10.0.*

depends python:

>=2.7,<2.8.0a0

depends python-dateutil:

depends python_abi:

2.7.* *_cp27mu

depends scipy:

depends setuptools:

depends statsmodels:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install edd

and update with::

   mamba update edd

To create a new environment, run:

mamba create --name myenvname edd

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/edd:<tag>

(see `edd/tags`_ for valid values for ``<tag>``)

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