recipe edta

Extensive de-novo TE Annotator

Homepage:

https://github.com/oushujun/EDTA

License:

GPL / GPL-3.0-only

Recipe:

/edta/meta.yaml

package edta

Versions:

2.1.0-1,  2.1.0-0,  2.0.1-0,  2.0.0-0,  1.9.6-2,  1.9.6-1,  1.9.6-0,  1.9.5-0,  1.9.4-0, 

2.1.0-1,  2.1.0-0,  2.0.1-0,  2.0.0-0,  1.9.6-2,  1.9.6-1,  1.9.6-0,  1.9.5-0,  1.9.4-0,  1.9.0-1,  1.9.0-0,  1.8.3-0,  1.8.2-0,  1.7.8-0,  1.7.7-0

Depends:

• biopython

• blast

• cd-hit

• coreutils

• genericrepeatfinder

• genometools-genometools

• glob2

• h5py <3

• keras >=2.2.4

• ltr_finder

• ltr_retriever

• mdust

• multiprocess

• muscle

• openjdk

• pandas

• perl

• perl-text-soundex

• python <3.7

• regex

• repeatmodeler

• scikit-learn >=0.19.0

• tensorflow 1.14

• tesorter

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install edta

and update with:

conda update edta

or use the docker container:

docker pull quay.io/biocontainers/edta:<tag>

(see edta/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/edta/README.html)