Command line NoD (clinod), for predicting nucleolar localization sequences.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install effectivet3
and update with:
conda update effectivet3
or use the docker container:
docker pull quay.io/biocontainers/effectivet3:<tag>
(see effectivet3/tags for valid values for
EffectiveT3 is Java program which is packaged with a custom wrapper shell script. This shell wrapper is called "effectivet3" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "effectivet3 -Xms512m -Xmx1g …"