recipe effectivet3

Command line NoD (clinod), for predicting nucleolar localization sequences.

Homepage

http://www.compbio.dundee.ac.uk/nod

License

Apache License, Version 2.0 + others used internally

Recipe

/effectivet3/meta.yaml

Links

biotools: effectivet3

package effectivet3

(downloads) docker_effectivet3

Versions

1.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install effectivet3

and update with:

conda update effectivet3

or use the docker container:

docker pull quay.io/biocontainers/effectivet3:<tag>

(see effectivet3/tags for valid values for <tag>)

Notes

EffectiveT3 is Java program which is packaged with a custom wrapper shell script. This shell wrapper is called "effectivet3" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "effectivet3 -Xms512m -Xmx1g …"