effectivet3

downloads

Command line NoD (clinod), for predicting nucleolar localization sequences.

Home http://www.compbio.dundee.ac.uk/nod
Versions 1.0.1
License Apache License, Version 2.0 + others used internally
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/effectivet3

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install effectivet3

and update with:

conda update effectivet3

Notes

EffectiveT3 is Java program which is packaged with a custom wrapper shell script. This shell wrapper is called “effectivet3” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “effectivet3 -Xms512m -Xmx1g …”

docker

A Docker container is available at https://quay.io/repository/biocontainers/effectivet3.