recipe effectivet3

Command line NoD (clinod), for predicting nucleolar localization sequences.

Homepage:

http://www.compbio.dundee.ac.uk/nod

License:

Apache License, Version 2.0 + others used internally

Recipe:

/effectivet3/meta.yaml

Links:

biotools: effectivet3

package effectivet3

(downloads) docker_effectivet3

Versions:

1.0.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install effectivet3

and update with:

conda update effectivet3

or use the docker container:

docker pull quay.io/biocontainers/effectivet3:<tag>

(see effectivet3/tags for valid values for <tag>)

Notes

EffectiveT3 is Java program which is packaged with a custom wrapper shell script. This shell wrapper is called "effectivet3" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "effectivet3 -Xms512m -Xmx1g …"

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