recipe eklipse

eKLIPse is a sensitive and specific tool allowing the detection and quantification of large mtDNA rearrangements.

Homepage:

https://github.com/dooguypapua/eKLIPse

License:

GPL3 / GNU General Public v3 or later (GPLv3+)

Recipe:

/eklipse/meta.yaml

package eklipse

versions:

1.8-1,  1.8-0

depends biopython:

depends blast:

>=2.3.0

depends circos:

depends python:

2.7.*

depends samtools:

depends tqdm:

4.53.0.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install eklipse

and update with::

   mamba update eklipse

To create a new environment, run:

mamba create --name myenvname eklipse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/eklipse:<tag>

(see `eklipse/tags`_ for valid values for ``<tag>``)

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