recipe emirge

EMIRGE reconstructs full length sequences from short sequencing reads

Homepage:

https://github.com/csmiller/EMIRGE

License:

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe:

/emirge/meta.yaml

package emirge

versions:

0.61.1-7,  0.61.1-6,  0.61.1-5,  0.61.1-4,  0.61.1-3,  0.61.1-2,  0.61.1-1,  0.61.1-0

depends biopython:

depends bowtie:

depends libgcc-ng:

>=10.3.0

depends libzlib:

>=1.2.11,<1.3.0a0

depends numpy:

depends pysam:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends samtools:

depends scipy:

depends vsearch:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install emirge

and update with::

   mamba update emirge

To create a new environment, run:

mamba create --name myenvname emirge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/emirge:<tag>

(see `emirge/tags`_ for valid values for ``<tag>``)

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