recipe emirge

EMIRGE reconstructs full length sequences from short sequencing reads

Homepage

https://github.com/csmiller/EMIRGE

License

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe

/emirge/meta.yaml

package emirge

(downloads) docker_emirge

Versions

0.61.1-3, 0.61.1-2, 0.61.1-1, 0.61.1-0

Depends biopython

Depends bowtie

Depends libgcc-ng

>=7.3.0

Depends numpy

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends scipy

Depends vsearch

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install emirge

and update with:

conda update emirge

or use the docker container:

docker pull quay.io/biocontainers/emirge:<tag>

(see emirge/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/emirge/README.html)