recipe emirge

EMIRGE reconstructs full length sequences from short sequencing reads

Homepage

https://github.com/csmiller/EMIRGE

License

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe

/emirge/meta.yaml

package emirge

Versions

0.61.1-5,  0.61.1-4,  0.61.1-3,  0.61.1-2,  0.61.1-1,  0.61.1-0

Depends

• biopython

• bowtie

• libgcc-ng >=7.5.0

• numpy

• pysam

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools

• scipy

• vsearch

• zlib >=1.2.11,<1.3.0a0

Required By

• phyloflash

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install emirge

and update with:

conda update emirge

or use the docker container:

docker pull quay.io/biocontainers/emirge:<tag>

(see emirge/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/emirge/README.html)