recipe ensembl-utils

Ensembl Python general-purpose utils

Homepage:

https://www.ensembl.org/

Documentation:

https://ensembl.github.io/ensembl-utils/

Developer docs:

https://github.com/Ensembl/ensembl-utils

License:

APACHE / Apache-2.0

Recipe:

/ensembl-utils/meta.yaml

Links:

biotools: Ensembl

package ensembl-utils

versions:

0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.0-0, 

0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.0-0,  0.2.0-0

depends pytest:

depends python:

>=3.10

depends python-dotenv:

>=0.19.2

depends pyyaml:

>=6.0,<7.0

depends requests:

>=2.22.0

depends sqlalchemy:

>=1.4.0,<2.0

depends sqlalchemy-utils:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ensembl-utils

and update with::

   mamba update ensembl-utils

To create a new environment, run:

mamba create --name myenvname ensembl-utils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ensembl-utils:<tag>

(see `ensembl-utils/tags`_ for valid values for ``<tag>``)

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