recipe epic

Chip-Seq broad peak/domain finder.

Homepage:

http://github.com/endrebak/epic

License:

GNU General Public License v3 (GPLv3)

Recipe:

/epic/meta.yaml

package epic

versions:

0.2.12-7,  0.2.12-6,  0.2.12-5,  0.2.12-4,  0.2.12-3,  0.2.12-2,  0.2.12-1,  0.2.12-0,  0.2.9-1, 

0.2.12-7,  0.2.12-6,  0.2.12-5,  0.2.12-4,  0.2.12-3,  0.2.12-2,  0.2.12-1,  0.2.12-0,  0.2.9-1,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.5-0,  0.2.4-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.28-0,  0.1.27-0,  0.1.26-0,  0.1.25-0,  0.1.24-0,  0.1.20-0,  0.1.17-0

depends bedtools:

depends docopt:

depends functools32:

depends joblib:

depends libgcc-ng:

>=10.3.0

depends natsort:

depends numpy:

depends pandas:

depends pybigwig:

depends pyfaidx:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends scipy:

depends typing:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install epic

and update with::

   mamba update epic

To create a new environment, run:

mamba create --name myenvname epic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/epic:<tag>

(see `epic/tags`_ for valid values for ``<tag>``)

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