- recipe epicseg
EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating the genome based on the state of the chromatin. It provides tools for extracting count data from BAM files, typlically corresponding to ChIP-seq experiments for histone marks (but other choices are possible) it learns a statistical model for the read counts based on a HMM, it annotates the genome, and it provides tools for displaying and analyzing the obtained models and segmentations. EpiCSeg can be used as an R package or from the command line via Rscript.
- Homepage:
- License:
GPL-3
- Recipe:
- package epicseg¶
-
- Versions:
1.0-7
,1.0-6
,1.0-5
,1.0-4
,1.0-3
,1.0-2
,1.0-1
,1.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install epicseg
and update with:
conda update epicseg
or use the docker container:
docker pull quay.io/biocontainers/epicseg:<tag>
(see epicseg/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/epicseg/README.html)