recipe epik

EPIK is a tool for fast alignement-free phylogenetic placements.

Homepage:

https://github.com/phylo42/epik

License:

MIT / MIT

Recipe:

/epik/meta.yaml

EPIK uses pre-computed phylo-k-mers indexes (see package IPK) to rapidly place large amounts of sequences on a fixed phylogenetic tree. Please cite: doi.org/10.1093/bioinformatics/btad692

package epik

(downloads) docker_epik

versions:

0.2.0-1,  0.2.0-0

depends boost-cpp:

1.85.*

depends click:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install epik

and update with::

   mamba update epik

To create a new environment, run:

mamba create --name myenvname epik

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/epik:<tag>

(see `epik/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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