recipe ericscript

EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data. It is able to generate synthetic gene fusions by using the EricScript simulator and calculate a number of statistical measures for evaluating gene fusion detection methods performance with EricScript CalcStats.

Homepage

https://sites.google.com/site/bioericscript

License

GPL3 / GPL3

Recipe

/ericscript/meta.yaml

package ericscript

(downloads) docker_ericscript

Versions

0.5.5-3, 0.5.5-2, 0.5.5-1, 0.5.5-0

Depends bedtools

Depends blat

Depends bwa

Depends perl

Depends r-ada

Depends r-base

Depends samtools

0.1.19.*

Depends seqtk

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ericscript

and update with:

conda update ericscript

or use the docker container:

docker pull quay.io/biocontainers/ericscript:<tag>

(see ericscript/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ericscript/README.html)