recipe ericscript

EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data. It is able to generate synthetic gene fusions by using the EricScript simulator and calculate a number of statistical measures for evaluating gene fusion detection methods performance with EricScript CalcStats.

Homepage:

https://sites.google.com/site/bioericscript

License:

GPL3 / GPL3

Recipe:

/ericscript/meta.yaml

package ericscript

(downloads) docker_ericscript

versions:

0.5.5-5,  0.5.5-4,  0.5.5-3,  0.5.5-2,  0.5.5-1,  0.5.5-0

depends bedtools:

depends blat:

depends bwa:

depends perl:

depends r-ada:

depends r-base:

depends samtools:

0.1.19.*

depends seqtk:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ericscript

and update with::

   mamba update ericscript

To create a new environment, run:

mamba create --name myenvname ericscript

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ericscript:<tag>

(see `ericscript/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ericscript/README.html)