recipe ericscript

EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data. It is able to generate synthetic gene fusions by using the EricScript simulator and calculate a number of statistical measures for evaluating gene fusion detection methods performance with EricScript CalcStats.

Homepage:

https://sites.google.com/site/bioericscript

License:

GPL3 / GPL3

Recipe:

/ericscript/meta.yaml

package ericscript

Versions:

0.5.5-5,  0.5.5-4,  0.5.5-3,  0.5.5-2,  0.5.5-1,  0.5.5-0

Depends:

• bedtools

• blat

• bwa

• perl

• r-ada

• r-base

• samtools 0.1.19.*

• seqtk

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ericscript

and update with:

conda update ericscript

or use the docker container:

docker pull quay.io/biocontainers/ericscript:<tag>

(see ericscript/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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