recipe ervdetective

An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs).

Homepage:

https://github.com/ZhijianZhou01/ervdetective

License:

LGPL / LGPL-2.1-or-later

Recipe:

/ervdetective/meta.yaml

package ervdetective

versions:

1.0.8-0

depends biopython:

>=1.77

depends blast:

>=2.9.0

depends genometools-genometools:

>=1.6.1

depends hmmer:

>=3.0

depends psutil:

>=5.9.1

depends python:

>=3.6

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ervdetective

and update with::

   mamba update ervdetective

To create a new environment, run:

mamba create --name myenvname ervdetective

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ervdetective:<tag>

(see `ervdetective/tags`_ for valid values for ``<tag>``)

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