recipe espresso

ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data

Homepage:

https://github.com/Xinglab/espresso

License:

Free for non-commercial use, see LICENSE file

Recipe:

/espresso/meta.yaml

package espresso

versions:

1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.2-0,  1.3.1-0

depends blast:

>=2.8.1

depends hmmer:

>=3.3.1

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl:

>=5.8

depends perl-storable:

>=3.0

depends samtools:

>=1.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install espresso

and update with::

   mamba update espresso

To create a new environment, run:

mamba create --name myenvname espresso

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/espresso:<tag>

(see `espresso/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/espresso/README.html)