recipe eukcc

Check eukaryotic genomes or MAGs for completeness and contamination

Homepage:

https://github.com/Finn-Lab/EukCC/

Documentation:

https://eukcc.readthedocs.io/en/latest/

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/eukcc/meta.yaml

package eukcc

Versions:

2.1.0-0,  2.0-0,  0.3-0,  0.2-1,  0.2-0,  0.1.5.1-0,  0.1.4.6-0

Depends:

• bwa

• configargparse

• epa-ng 0.3.8.*

• ete3

• hmmer 3.3.*

• jsonpickle

• metaeuk 4.a0f584d.*

• numpy

• pplacer

• pysam

• python

• python >=3.6

• samtools >=1.12

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install eukcc

and update with:

conda update eukcc

or use the docker container:

docker pull quay.io/biocontainers/eukcc:<tag>

(see eukcc/tags for valid values for <tag>)

Download stats

Link to this page

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