recipe eukfinder

Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.

Homepage:

https://github.com/RogerLab/Eukfinder

License:

MIT

Recipe:

/eukfinder/meta.yaml

package eukfinder

versions:

1.2.3-0

depends bowtie2:

depends centrifuge:

depends ete3:

depends joblib:

depends libgcc:

>=12

depends libstdcxx:

>=12

depends numpy:

depends pandas:

depends pyqt:

5.*

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends seqkit:

depends spades:

depends trimmomatic:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install eukfinder

and update with::

   mamba update eukfinder

To create a new environment, run:

mamba create --name myenvname eukfinder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/eukfinder:<tag>

(see `eukfinder/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/eukfinder/README.html)