recipe eva-sub-cli

EVA Submission Command Line Interface

Homepage:

https://github.com/EBIvariation/eva-sub-cli

License:

Apache-2.0

Recipe:

/eva-sub-cli/meta.yaml

package eva-sub-cli

versions:

0.2-0

depends ebi-eva-common-pyutils:

>=0.6.1

depends jinja2:

depends jsonschema:

depends nextflow:

>=21.10.0

depends nodejs:

>=10.19.1

depends openpyxl:

depends python:

>=3.8

depends pyyaml:

depends requests:

depends vcf-validator:

>=0.9.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install eva-sub-cli

and update with::

   mamba update eva-sub-cli

To create a new environment, run:

mamba create --name myenvname eva-sub-cli

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/eva-sub-cli:<tag>

(see `eva-sub-cli/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/eva-sub-cli/README.html)