recipe evigene

A genome informatics project for Evidence Directed Gene Construction for Eukaryotes

Homepage:

http://arthropods.eugenes.org/EvidentialGene/

License:

Don Gilbert, gilbertd At indiana edu, 2018

Recipe:

/evigene/meta.yaml

EvidentialGene is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu. The perl scripts are nested inside the 'scripts' folder and, therefor can only be used by providing the full path such as '$EVIGENEHOME/scripts/prot/tr2aacds.pl -h'

package evigene

(downloads) docker_evigene

versions:

23.7.15-1,  23.7.15-0

depends blast:

depends cd-hit:

depends exonerate:

depends perl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install evigene

and update with::

   mamba update evigene

To create a new environment, run:

mamba create --name myenvname evigene

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/evigene:<tag>

(see `evigene/tags`_ for valid values for ``<tag>``)

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Link to this page

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