recipe exonerate

Exonerate - A generic tool for pairwise sequence comparison / alignment

Homepage:

https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate

License:

GPL-3.0-or-later

Recipe:

/exonerate/meta.yaml

Links:

biotools: exonerate

package exonerate

(downloads) docker_exonerate

versions:
2.4.0-8,  2.4.0-7,  2.4.0-6,  2.4.0-5,  2.4.0-4,  2.4.0-3,  2.4.0-2,  2.4.0-1,  2.4.0-0, 

2.4.0-8,  2.4.0-7,  2.4.0-6,  2.4.0-5,  2.4.0-4,  2.4.0-3,  2.4.0-2,  2.4.0-1,  2.4.0-0,  2.2.0-1,  2.2.0-0

depends glib:

depends libgcc-ng:

>=12

depends libglib:

>=2.80.0,<3.0a0

depends pcre:

>=8.45,<9.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install exonerate

and update with::

   mamba update exonerate

To create a new environment, run:

mamba create --name myenvname exonerate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/exonerate:<tag>

(see `exonerate/tags`_ for valid values for ``<tag>``)

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