recipe exparna

The program finds the longest common subsequence of exact pattern matches (LCS-EPM)

Homepage:

https://github.com/BackofenLab/ExpaRNA

License:

GPL-2.0

Recipe:

/exparna/meta.yaml

Links:

biotools: exparna

package exparna

(downloads) docker_exparna

versions:

1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2,  1.0.1-1,  1.0.1-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends viennarna:

>=2.5.1,<2.6.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install exparna

and update with::

   mamba update exparna

To create a new environment, run:

mamba create --name myenvname exparna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/exparna:<tag>

(see `exparna/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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