recipe extract_fasta_seq

To extract specific fasta sequences from a fasta file.

Homepage:

https://github.com/linzhi2013/extract_fasta_seq

License:

GPL3 / GNU General Public v3 or later (GPLv3+)

Recipe:

/extract_fasta_seq/meta.yaml

Links:

biotools: extract_fasta_seq

package extract_fasta_seq

versions:

0.0.1-0

depends python:

>=2.7.15

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install extract_fasta_seq

and update with::

   mamba update extract_fasta_seq

To create a new environment, run:

mamba create --name myenvname extract_fasta_seq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/extract_fasta_seq:<tag>

(see `extract_fasta_seq/tags`_ for valid values for ``<tag>``)

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