recipe extract_genome_region

Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.

Homepage:

https://github.com/xguse/extract-genome-region

License:

BSD License

Recipe:

/extract_genome_region/meta.yaml

package extract_genome_region

(downloads) docker_extract_genome_region

versions:

0.0.3-3,  0.0.3-2,  0.0.3-1,  0.0.3-0

depends click:

depends pyfaidx:

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install extract_genome_region

and update with::

   mamba update extract_genome_region

To create a new environment, run:

mamba create --name myenvname extract_genome_region

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/extract_genome_region:<tag>

(see `extract_genome_region/tags`_ for valid values for ``<tag>``)

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Link to this page

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