recipe extract_genome_region

Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.

Homepage

https://github.com/xguse/extract-genome-region

License

BSD License

Recipe

/extract_genome_region/meta.yaml

package extract_genome_region

(downloads) docker_extract_genome_region

Versions

0.0.3-1, 0.0.3-0

Depends click

Depends pyfaidx

Depends python

>=2.7,<2.8.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install extract_genome_region

and update with:

conda update extract_genome_region

or use the docker container:

docker pull quay.io/biocontainers/extract_genome_region:<tag>

(see extract_genome_region/tags for valid values for <tag>)