recipe extract_vcf

Tool to extract information from vcf file.

Homepage:

https://github.com/moonso/extract_vcf

License:

BSD / BSD

Recipe:

/extract_vcf/meta.yaml

package extract_vcf

versions:

0.5-0

depends configobj:

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install extract_vcf

and update with::

   mamba update extract_vcf

To create a new environment, run:

mamba create --name myenvname extract_vcf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/extract_vcf:<tag>

(see `extract_vcf/tags`_ for valid values for ``<tag>``)

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