recipe fast5-research

ONT Research fast5 read/write package



OTHER / Mozilla Public License 2.0 (MPL 2.0)



package fast5-research

(downloads) docker_fast5-research



depends futures:

depends h5py:


depends numpy:


depends progressbar2:

depends python:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fast5-research

and update with::

   mamba update fast5-research

To create a new environment, run:

mamba create --name myenvname fast5-research

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `fast5-research/tags`_ for valid values for ``<tag>``)

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