recipe fastml

FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences

Homepage:

http://fastml.tau.ac.il/

License:

GNU GPLv2.0

Recipe:

/fastml/meta.yaml

package fastml

versions:

3.11-0

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends perl:

depends perl-bioperl:

depends raxml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fastml

and update with::

   mamba update fastml

To create a new environment, run:

mamba create --name myenvname fastml

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fastml:<tag>

(see `fastml/tags`_ for valid values for ``<tag>``)

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