recipe fastoma

FastOMA - a package to infer orthology information among proteomes

Homepage:

https://github.com/DessimozLab/FastOMA

License:

Mozilla Public License 2.0

Recipe:

/fastoma/meta.yaml

Links:

doi: 10.1038/s41592-024-02552-8

package fastoma

versions:

0.3.5-0,  0.3.4-0

depends dendropy:

depends fasttree:

depends future:

depends jupyter:

depends mafft:

depends matplotlib-base:

depends mmseqs2:

depends networkx:

depends nextflow:

depends omamer:

depends papermill:

depends pyparsing:

depends python:

depends seaborn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fastoma

and update with::

   mamba update fastoma

To create a new environment, run:

mamba create --name myenvname fastoma

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fastoma:<tag>

(see `fastoma/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fastoma/README.html)