recipe fastphylo

Fastphylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators" and "Fast Neighbor Joining".

Homepage:

https://github.com/arvestad/FastPhylo

License:

MIT

Recipe:

/fastphylo/meta.yaml

Links:

doi: 10.1186/1471-2105-14-334

package fastphylo

versions:

1.0.3-8,  1.0.3-7,  1.0.3-6,  1.0.3-5,  1.0.3-4,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends libxml2:

>=2.11.4,<2.12.0a0

depends libzlib:

>=1.2.13,<1.3.0a0

depends openmpi:

<4.0.2

depends openmpi:

>=4.0.1,<4.1.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fastphylo

and update with::

   mamba update fastphylo

To create a new environment, run:

mamba create --name myenvname fastphylo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fastphylo:<tag>

(see `fastphylo/tags`_ for valid values for ``<tag>``)

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