recipe fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

Homepage:

https://github.com/brwnj/fastq-multx

License:

MIT

Recipe:

/fastq-multx/meta.yaml

package fastq-multx

(downloads) docker_fastq-multx

versions:
1.4.2-5,  1.4.2-4,  1.4.2-3,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.4.0-0,  1.3.1-3,  1.3.1-2, 

1.4.2-5,  1.4.2-4,  1.4.2-3,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.4.0-0,  1.3.1-3,  1.3.1-2,  1.3.0-2,  1.3.0-1

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fastq-multx

and update with::

   mamba update fastq-multx

To create a new environment, run:

mamba create --name myenvname fastq-multx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fastq-multx:<tag>

(see `fastq-multx/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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