recipe fastq_utils

Set of Linux utilities to validate and manipulate fastq files. It also includes a set of programs to preprocess barcodes (namely UMIs, cells and samples), add the barcodes as tags in BAM files and count UMIs.

Homepage

https://github.com/nunofonseca/fastq_utils

License

GPL / GPL-3

Recipe

/fastq_utils/meta.yaml

package fastq_utils

(downloads) docker_fastq_utils

Versions

0.19.2-0, 0.18.2-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fastq_utils

and update with:

conda update fastq_utils

or use the docker container:

docker pull quay.io/biocontainers/fastq_utils:<tag>

(see fastq_utils/tags for valid values for <tag>)