recipe faststructure

A variational framework for inferring population structure from SNP genotype data.

Homepage:

https://github.com/rajanil/fastStructure

License:

MIT / MIT

Recipe:

/faststructure/meta.yaml

package faststructure

(downloads) docker_faststructure

versions:

1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-1,  1.0-0

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=10.3.0

depends matplotlib:

depends numpy:

depends openblas:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install faststructure

and update with::

   mamba update faststructure

To create a new environment, run:

mamba create --name myenvname faststructure

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/faststructure:<tag>

(see `faststructure/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/faststructure/README.html)