recipe favites_lite

FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation

Homepage:

https://github.com/niemasd/FAVITES-Lite

License:

GPL3 / GPL-3.0-or-later

Recipe:

/favites_lite/meta.yaml

package favites_lite

versions:

1.0.3-0,  1.0.1-0

depends coatran:

depends gemf_favites:

depends niemagraphgen:

depends numpy:

depends python:

>=3.7

depends scipy:

depends seq-gen:

depends treesap:

depends treeswift:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install favites_lite

and update with::

   mamba update favites_lite

To create a new environment, run:

mamba create --name myenvname favites_lite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/favites_lite:<tag>

(see `favites_lite/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/favites_lite/README.html)