recipe fgmp

FGMP: assessing fungal genome completeness and gene content.

Homepage

https://github.com/stajichlab/FGMP

License

MIT

Recipe

/fgmp/meta.yaml

Links

biotools: fgmp, doi: 10.1101/049619

package fgmp

(downloads) docker_fgmp

Versions

1.0.3-0, 1.0.1-0

Depends augustus

>=3.2.3

Depends blast

>=2.2.31

Depends emboss

>=6.5.7

Depends exonerate

>=2.2.0

Depends hmmer

>=3.0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-app-cpanminus

Depends perl-bioperl

Depends perl-ipc-run

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fgmp

and update with:

conda update fgmp

or use the docker container:

docker pull quay.io/biocontainers/fgmp:<tag>

(see fgmp/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fgmp/README.html)