recipe fido

A method for protein identification in MS/MS proteomics. Think of it like a protein delivery dog. You bring it the scored matches between peptides and spectra, and it fetches a list of proteins ranked by posterior probability by doing clever tricks.

Homepage:

https://noble.gs.washington.edu/proj/fido/

License:

MIT license

Recipe:

/fido/meta.yaml

package fido

(downloads) docker_fido

versions:

1.0-7,  1.0-6,  1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-1,  1.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fido

and update with::

   mamba update fido

To create a new environment, run:

mamba create --name myenvname fido

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fido:<tag>

(see `fido/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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