- recipe fido
A method for protein identification in MS/MS proteomics. Think of it like a protein delivery dog. You bring it the scored matches between peptides and spectra, and it fetches a list of proteins ranked by posterior probability by doing clever tricks.
- package fido¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install fido and update with:: mamba update fido
To create a new environment, run:
mamba create --name myenvname fido
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/fido:<tag> (see `fido/tags`_ for valid values for ``<tag>``)