recipe find_differential_primers

Scripts to aid the design of differential primers for diagnostic PCR.

Homepage:

https://github.com/widdowquinn/find_differential_primers

License:

MIT / MIT

Recipe:

/find_differential_primers/meta.yaml

Links:

doi: 10.5281/zenodo.9861

package find_differential_primers

versions:

0.1.4-2,  0.1.4-1,  0.1.4-0,  0.1.3-3,  0.1.3-2,  0.1.3-1,  0.1.3-0,  0.1.3.p1-0

depends biopython:

<1.78

depends blast:

depends bx-python:

depends emboss:

depends primer3:

<=1.1.4

depends prodigal:

depends python:

>2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install find_differential_primers

and update with::

   mamba update find_differential_primers

To create a new environment, run:

mamba create --name myenvname find_differential_primers

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/find_differential_primers:<tag>

(see `find_differential_primers/tags`_ for valid values for ``<tag>``)

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