recipe fings

Filters for Next Generation Sequencing

Homepage:

https://github.com/cpwardell/FiNGS

License:

APACHE / Apache Software

Recipe:

/fings/meta.yaml

package fings

versions:

1.7.1-0,  1.6.8-0,  1.6.7-0

depends editdistance:

depends joblib:

depends numpy:

depends pandas:

depends pysam:

depends python:

>=3.6

depends pyvcf:

depends scipy:

depends seaborn:

depends statsmodels:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fings

and update with::

   mamba update fings

To create a new environment, run:

mamba create --name myenvname fings

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fings:<tag>

(see `fings/tags`_ for valid values for ``<tag>``)

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Link to this page

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