recipe firecloud

API and CLI for Broad Institute's Firecloud workspace/workflow management service.

Homepage:

https://github.com/broadinstitute/fiss

Documentation:

https://software.broadinstitute.org/firecloud

License:

BSD / BSD-3-Clause

Recipe:

/firecloud/meta.yaml

package firecloud

(downloads) docker_firecloud

versions:
0.16.37-0,  0.16.35-0,  0.16.31-0,  0.16.30-0,  0.16.28-0,  0.16.27-1,  0.16.27-0,  0.16.26-1,  0.16.26-0, 

0.16.37-0,  0.16.35-0,  0.16.31-0,  0.16.30-0,  0.16.28-0,  0.16.27-1,  0.16.27-0,  0.16.26-1,  0.16.26-0,  0.16.25-0,  0.16.20-0

depends google-auth:

>=1.6.3

depends google-cloud-storage:

depends nose:

depends pydot:

depends pylint:

>=1.9.5

depends python:

<3.12

depends requests:

depends six:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install firecloud

and update with::

   mamba update firecloud

To create a new environment, run:

mamba create --name myenvname firecloud

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/firecloud:<tag>

(see `firecloud/tags`_ for valid values for ``<tag>``)

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