recipe fishtaco

FishTaco: a metagenomic computational framework, aiming to identify the taxa that are driving functional shifts in microbiomes.

Homepage:

https://github.com/borenstein-lab/fishtaco/

License:

BSD-3-Clause

Recipe:

/fishtaco/meta.yaml

package fishtaco

versions:

1.0.5-2,  1.0.5-1,  1.0.5-0

depends musicc:

>=1.0.2

depends numpy:

>=1.6.1

depends pandas:

>=0.14

depends python:

depends scikit-learn:

>=0.15.2,<0.18.0a0

depends scipy:

>=0.9

depends statsmodels:

>=0.5.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fishtaco

and update with::

   mamba update fishtaco

To create a new environment, run:

mamba create --name myenvname fishtaco

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fishtaco:<tag>

(see `fishtaco/tags`_ for valid values for ``<tag>``)

Notes

With FishTaco 1.1.0 the license has been changed such that 1.1.0 and 1.1.1 cannot be distributed in the Bioconda channel. DO NOT update the recipe to those versions! See https://github.com/borenstein-lab/fishtaco/issues/2.

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