recipe flagx

FLAG-X: FLow cytometry Automated Gating toolboX

Homepage:

https://github.com/bionetslab/FLAG-X

License:

GPL-3.0-only

Recipe:

/flagx/meta.yaml

package flagx

versions:

0.2.0-0,  0.1.0-0

depends click:

depends flowio:

depends matplotlib-base:

depends numba:

depends numpy:

depends pandas:

depends python:

>=3.10,<3.14

depends pytometry:

depends pyyaml:

depends scanpy:

depends scikit-learn:

depends scipy:

depends somoclu:

depends typing_extensions:

depends umap-learn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install flagx

and update with::

   mamba update flagx

To create a new environment, run:

mamba create --name myenvname flagx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/flagx:<tag>

(see `flagx/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flagx/README.html)