recipe flair

Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).

Homepage:

https://github.com/BrooksLabUCSC/flair

License:

BSD-3

Recipe:

/flair/meta.yaml

Links:

doi: 10.1101/410183

package flair

Versions:

1.7.0-1,  1.7.0-0,  1.6.4-0,  1.6.3-0,  1.5-4,  1.5-3,  1.4-0

Depends:

• bedtools

• bioconductor-apeglm

• bioconductor-deseq2

• bioconductor-drimseq

• bioconductor-stager

• mappy 2.24.*

• matplotlib-base

• minimap2

• ncls

• pandas

• pybedtools

• pysam

• python >=3.6

• r-ggplot2

• r-lazyeval

• r-qqman

• rpy2

• samtools

• scipy

• seaborn-base

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install flair

and update with:

conda update flair

or use the docker container:

docker pull quay.io/biocontainers/flair:<tag>

(see flair/tags for valid values for <tag>)

Download stats

Link to this page

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