recipe flashlfq

ultrafast label-free quantification algorithm for mass-spectrometry proteomics

Homepage:

https://github.com/smith-chem-wisc/FlashLFQ

License:

GPL / LGPL-3.0

Recipe:

/flashlfq/meta.yaml

Links:

doi: 10.1021/acs.jproteome.7b00608

package flashlfq

(downloads) docker_flashlfq

versions:
1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.1.1-1,  1.1.1-0,  1.1.0-0, 

1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.1.112-0,  0.1.111-0,  0.1.110-0,  0.1.109-0,  0.1.108-1,  0.1.108-0,  0.1.105-2,  0.1.105-0,  0.1.101-0,  0.1.100-0

depends dotnet-runtime:

6.0.*

depends openssl:

1.1.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install flashlfq

and update with::

   mamba update flashlfq

To create a new environment, run:

mamba create --name myenvname flashlfq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/flashlfq:<tag>

(see `flashlfq/tags`_ for valid values for ``<tag>``)

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