- recipe flextaxd
Script that allows the creation of custom kraken databases from various sources (NCBI, QIIME, CanSNPer)
- package flextaxd¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install flextaxd and update with:: mamba update flextaxd
To create a new environment, run:
mamba create --name myenvname flextaxd
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/flextaxd:<tag> (see `flextaxd/tags`_ for valid values for ``<tag>``)