recipe foldseek

Foldseek: fast and accurate protein structure search

Homepage:

https://github.com/steineggerlab/foldseek

License:

GPL / GPL-3

Recipe:

/foldseek/meta.yaml

Links:

doi: 10.1038/s41587-023-01773-0, doi: 10.1038/s41586-023-06510-w, doi: 10.1101/2024.04.14.589414, biotools: foldseek

package foldseek

(downloads) docker_foldseek

versions:
9.427df8a-1,  9.427df8a-0,  8.ef4e960-1,  8.ef4e960-0,  7.04e0ec8-0,  6.29e2557-2,  6.29e2557-1,  6.29e2557-0,  5.53465f0-0, 

9.427df8a-1,  9.427df8a-0,  8.ef4e960-1,  8.ef4e960-0,  7.04e0ec8-0,  6.29e2557-2,  6.29e2557-1,  6.29e2557-0,  5.53465f0-0,  4.645b789-0,  3.915ef7d-1,  3.915ef7d-0,  2.8bd520-1,  2.8bd520-0,  1.3c64211-1,  1.3c64211-0

depends _openmp_mutex:

>=4.5

depends aria2:

depends bzip2:

>=1.0.8,<2.0a0

depends gawk:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends wget:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install foldseek

and update with::

   mamba update foldseek

To create a new environment, run:

mamba create --name myenvname foldseek

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/foldseek:<tag>

(see `foldseek/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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