recipe forceatlas2-python

Multithreaded Gephi Force Atlas2 Layout algorithm in 2D and 3D.

Homepage:

https://github.com/klarman-cell-observatory/forceatlas2-python

Developer docs:

https://github.com/klarman-cell-observatory/forceatlas2

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/forceatlas2-python/meta.yaml

This tool is used to calculate the pseudo-temporal development trajectory of single-cell data.

package forceatlas2-python

versions:

1.1-1,  1.1-0

depends importlib_metadata:

>=0.7

depends openjdk:

>=8

depends pandas:

>=0.21

depends python:

>=3.6

depends setuptools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install forceatlas2-python

and update with::

   mamba update forceatlas2-python

To create a new environment, run:

mamba create --name myenvname forceatlas2-python

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/forceatlas2-python:<tag>

(see `forceatlas2-python/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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