recipe forgi

RNA Graph Library

Homepage:

https://viennarna.github.io/forgi/

License:

GPL 3.0

Recipe:

/forgi/meta.yaml

package forgi

versions:

2.2.2-1,  2.2.2-0,  2.1.1-4,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.3-1,  2.0.3-0, 

2.2.2-1,  2.2.2-0,  2.1.1-4,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.3-1,  2.0.3-0,  2.0-2,  1.1-2,  1.1-1,  1.1-0

depends appdirs:

>=1.4.3

depends beautifulsoup4:

>=4.6

depends biopython:

>=1.70

depends future:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends logging_exceptions:

>=0.1.6

depends matplotlib-base:

>=2

depends networkx:

>=2.0

depends numpy:

>=1.10.0

depends numpy:

>=1.21.6,<2.0a0

depends pandas:

>=0.20

depends python:

>=3.8,<3.9.0a0

depends python_abi:

3.8.* *_cp38

depends scipy:

>=0.19.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install forgi

and update with::

   mamba update forgi

To create a new environment, run:

mamba create --name myenvname forgi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/forgi:<tag>

(see `forgi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/forgi/README.html)