recipe fraggenescan

FragGeneScan is an application for finding (fragmented) genes in short reads.

Homepage:

https://sourceforge.net/projects/fraggenescan/

License:

BSD

Recipe:

/fraggenescan/meta.yaml

Links:

doi: 10.1093/nar/gkq747, biotools: fraggenescan

FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

package fraggenescan

Versions:

1.31-6,  1.31-5,  1.31-4,  1.31-3,  1.31-2,  1.31-1,  1.31-0,  1.30-2,  1.30-1, 

1.31-6,  1.31-5,  1.31-4,  1.31-3,  1.31-2,  1.31-1,  1.31-0,  1.30-2,  1.30-1,  1.30-0

Depends:

• libgcc-ng >=12

• perl

Required By:

• maxbin2

• graph2pro-var

• metabinner

• isescan

• semibin

• metacoag

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fraggenescan

and update with:

conda update fraggenescan

or use the docker container:

docker pull quay.io/biocontainers/fraggenescan:<tag>

(see fraggenescan/tags for valid values for <tag>)

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