recipe fraggenescan

FragGeneScan is an application for finding (fragmented) genes in short reads.

Homepage:

https://sourceforge.net/projects/fraggenescan/

License:

BSD

Recipe:

/fraggenescan/meta.yaml

Links:

doi: 10.1093/nar/gkq747, biotools: fraggenescan

FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

package fraggenescan

(downloads) docker_fraggenescan

versions:
1.32-0,  1.31-8,  1.31-7,  1.31-6,  1.31-5,  1.31-4,  1.31-3,  1.31-2,  1.31-1, 

1.32-0,  1.31-8,  1.31-7,  1.31-6,  1.31-5,  1.31-4,  1.31-3,  1.31-2,  1.31-1,  1.31-0,  1.30-2,  1.30-1,  1.30-0

depends libgcc:

>=13

depends perl:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fraggenescan

and update with::

   mamba update fraggenescan

To create a new environment, run:

mamba create --name myenvname fraggenescan

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fraggenescan:<tag>

(see `fraggenescan/tags`_ for valid values for ``<tag>``)

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