recipe fraggenescan

FragGeneScan is an application for finding (fragmented) genes in short reads.

Homepage

https://sourceforge.net/projects/fraggenescan/

License

BSD

Recipe

/fraggenescan/meta.yaml

Links

doi: 10.1093/nar/gkq747, biotools: fraggenescan

FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

package fraggenescan

Versions

1.31-2,  1.31-1,  1.31-0,  1.30-2,  1.30-1,  1.30-0

Depends

• libgcc-ng >=7.5.0

• perl

Required By

• graph2pro-var

• isescan

• run-dbcan

• maxbin2

• mosca

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fraggenescan

and update with:

conda update fraggenescan

or use the docker container:

docker pull quay.io/biocontainers/fraggenescan:<tag>

(see fraggenescan/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fraggenescan/README.html)