- recipe frogs
FROGS is a workflow designed to metabarcoding sequence analysis
- Homepage:
- License:
GNU GPL v3
- Recipe:
FROGS produces an ASVs count matrix from high depth sequencing amplicon data. This is the official release 5.0.0 of FROGS. To fully install FROGS dependencies, please refer to the frogs-conda-requirements.txt and frogsfunc-conda-requirements.txt available at https://github.com/geraldinepascal/FROGS
- package frogs¶
- versions:
5.0.0-0,4.1.0-2,4.1.0-1,4.1.0-0,4.0.1-0,4.0.0-0,3.2.3-0,3.2.2-0,3.2.1-0,5.0.0-0,4.1.0-2,4.1.0-1,4.1.0-0,4.0.1-0,4.0.0-0,3.2.3-0,3.2.2-0,3.2.1-0,3.2.0-0,3.1.0-1,3.1.0-0,2.0.1-1,2.0.1-0- depends pandas:
>=1.1.5- depends perl:
- depends perl-io-zlib:
- depends perl-perlio-gzip:
- depends python:
<=3.7.0- depends rdptools:
2.0.3.*- depends scipy:
>=1.1.0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install frogs and update with:: mamba update frogs
To create a new environment, run:
mamba create --name myenvname frogs
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/frogs:<tag> (see `frogs/tags`_ for valid values for ``<tag>``)
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Link to this page¶
Render an 
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[](http://bioconda.github.io/recipes/frogs/README.html)
